eDNA metabarcoding analyses
Heron O.H.
08
May, 2024
Hi there
Here you can find the scripts I use to perform eDNA
metabarcoding analyses
Feel free to use and modify the codes below and adapt it to your own
analyses, and get in touch if you have any doubts!
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
