Get taxonomy ranks for a list of NCBI Taxonomy Tax ID — parallel_get_tax • BLASTr

Get taxonomy ranks for a list of NCBI Taxonomy Tax ID in parallel.

Usage

parallel_get_tax(
  organisms_taxIDs,
  parse_result = TRUE,
  total_cores = 1,
  retry_times = 10,
  verbose = FALSE,
  env_name = "entrez-env"
)

Arguments

organisms_taxIDs: Vector of NCBI Taxonomy Tax ID to retrieve taxonomy for.
parse_result: Should the taxonomy be returned as the efetch returns it or should it be parsed into a tibble.
total_cores: Number of threads to use. Defaults to 1.
retry_times: Number of times to retry fetching taxonomy if it fails at first.

Value

Vector of Tax Ids.