Installs the necessary command-line tools ('blast' and 'efetch') into conda environments if they are not already available. This ensures that all dependencies required by the package are present and up-to-date.
Usage
install_dependencies(
verbose = c("silent", "cmd", "output", "full"),
force = FALSE
)
Arguments
- verbose
A character string specifying the verbosity level during environment creation.
Options include "silent", "cmd", "output", or "full". Default is "silent".
- force
A logical value indicating whether to force the re-creation of the Conda environments even if they already exist. Default is FALSE.
Value
Invisibly returns TRUE after attempting to install the dependencies.
Examples
if (FALSE) { # \dontrun{
# Install dependencies with default settings
install_dependencies()
# Install dependencies with verbose output
install_dependencies(verbose = "output")
# Force re-installation of dependencies
install_dependencies(force = TRUE)
} # }
