Get taxonomy ranks using NCBI Taxonomy Tax ID — get_tax_by

Recover complete taxonomy for a given NCBI Taxonomy Tax ID

Usage

get_tax_by_name(
  organisms_names,
  parse_result = TRUE,
  verbose = FALSE,
  env_name = "entrez-env"
)

organisms_names: Vector of NCBI Taxonomy Tax ID to retrieve taxonomy for.
parse_result: Should the taxonomy be returned as the efetch returns it or should it be parsed into a tibble.
verbose: Character string indicating whether to print verbose messages during the process. Default is silent.
env_name: Character string specifying the name of the conda environment where efetch is installed. Default is "blastr-entrez-env".
total_cores: Number of threads to use. Defaults to 1.
show_command: Should the efetch command on command line be printed for debugging. Defaults to TRUE.

A tibble with all the taxonomic ranks for the corresponding taxID.