Retrieve complete sequence header from BLAST DB based on SubjectIDs
Usage
get_fasta_header(id, db_path, env_name = "blast-env", verbose = FALSE)
Arguments
- id
SubjectID from BLAST results or any NCBI Nucleotide identifier.
- db_path
Complete path do formatted BLAST database.
- env_name
The name of the conda environment with the parameter (i.e. "blast-env")
- verbose
Should condathis::run() internal command be shown?
Value
Complete identifier for the SubjectID as is on the database.
Examples
if (FALSE) { # \dontrun{
BLASTr::get_fasta_header(id = "AP011979.1", db_path = "/data/databases/nt/nt")
} # }